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SECM4 Workshop
March 27-29, 2024, Florida State University

Agenda

Day 1

  • 8:15: Pickup from hotel

  • 8:30 - 12:00: Session 1

    • Introduction​

    • Setup

    • Cameras and Frames

  • 12:00 - 1:00: Lunch​

  • 1:00 - 2:45: Session 2

    • CTF​

    • Particle Picking

    • Stack Making

  • 2:45 - 3:15:​ Break

  • 3:15 - 5:30: Session 3

    • 2D classification​

    • 3D refinement

Day 2

  • 8:45: Pickup from hotel

  • 9:00 - 12:00: Session 1

    • Relion​

    • Advanced particle picking

    • Advanced 2D classification

  • 12:00 - 1:00: Lunch​

  • 1:00 - 2:45: Session 2

    • 3D classification​

  • 2:45 - 3:15:​ Break

  • 3:15 - 5:30: Session 3

    • Frame alignment in CryoSparc​

    • Work through the rest of the workflow

Day 3

  • 8:45: Pickup from hotel

  • 9:00 - 12:00: Session 1

    • ChimeraX​

    • Segmentation

    • Focused refinement in CryoSparc

  • 12:00 - 1:00: Lunch​

  • 1:00 - 2:45: Session 2

    • Modeling â€‹

      • ModelAngelo​

    • Alpha Fold​

    • Validations

  • 2:45 - 3:15:​ Break

  • 3:15 - 5:30: Session 3

    • Refinement competition

    • Wrap up and Q&A

Venue and Travel information

Venue

BioUnit I

89 Chieftan Way

Tallahassee, FL 32306

Hotel

Accepted workshop applicants will have rooms reserved for them at a nearby hotel. The workshop will cover the cost of the hotel room for accepted applicants.

Travel and Meals

Participants are responsible for covering their own travel. Meals will not be provided but there are many nearby and affordable locations for meals. The Seminole Cafe is a very short walk from the venue and offers breakfast, lunch, and dinner at a reasonable price.

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